📊 DNA benchmarks
Collection
Zero-shot DNA benchmarks for Variant Effect prediction, Sequence Recovery and Perturbation tasks. • 5 items • Updated • 14
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Gener Team
GenerTeam
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Genomic Foundation Models
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upvoted a collection 13 days ago
📊 DNA benchmarks updated a model about 1 month ago
GenerTeam/GENERator-v2-prokaryote-1.2b-base updated a model about 1 month ago
GenerTeam/GENERator-v2-prokaryote-3b-baseOrganizations
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GenerTeam/GENERanno-prokaryote-0.5b-cds-annotator
Token Classification • 0.5B • Updated • 107 • 2
GenerTeam/GENERanno-eukaryote-1.2b-cds-annotator-preview
Token Classification • 1B • Updated • 68 • 2
GenerTeam/GENERanno-eukaryote-0.5b-base
Fill-Mask • 0.5B • Updated • 70 • 1
GenerTeam/GENERanno-prokaryote-0.5b-base
Fill-Mask • 0.5B • Updated • 197 • 1
GenerTeam/GENERator-eukaryote-3b-base
Text Generation • 3B • Updated • 110 • 9
GenerTeam/GENERator-eukaryote-1.2b-base
Text Generation • 1B • Updated • 1.22k • 1
GenerTeam/GENERator-v2-eukaryote-3b-base
Text Generation • 3B • Updated • 478 • 1
GenerTeam/GENERator-v2-eukaryote-1.2b-base
Text Generation • 1B • Updated • 2.26k • 4
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Factorized Nucleotide Supervision
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1
Explore DNA tokenization and factorization
Conditioning the base distributions: fix a base, the rest adapt
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1
Visualize DNA tokenization and conditional predictions
Next-token prediction on a real sequence
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1
Predict the next DNA base in a given sequence
Per-base, BPE, and 6-mer on the same DNA sequence
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1
Visualize DNA tokenization by base, BPE, and 6‑mer